Official git repository for Biopython (originally converted from CVS)

Bidirectionally transformed strings

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Neural Networks for Protein Sequence Alignment

Comparative Genomics Toolkit 3

Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Scoring multiple sequence alignments with Python

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style

A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

Python Client Library for the G2P Portal API

Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.

A python library for decomposing and visualizing tandem repeat sequences

Less-wrong single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch, Smith-Waterman, and Levenshtein algorithms for sequence alignment

Papillomavirus genome annotation tool

The research of accuracy of searching cycles methods in symbolic sequences (time series) with presence of random noises.