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HPCing
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HPCing
49 followers · 38 following

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@HCEMM

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iquasere/README.md

Hi there! 👋

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

I Mostly Code in Python

Python                   13 repos            ████████░░░░░░░░░░░░░░░░░   31.71 % 
HTML                     10 repos            ██████░░░░░░░░░░░░░░░░░░░   24.39 % 
Java                     4 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   09.76 % 
Shell                    4 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   09.76 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.44 %

Last Updated on 03/01/2026 19:05:02 UTC

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  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 30 3

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 36 4

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 60 7